Yes he has been calling the shots so far, but officially he is not in charge of the team. If you look at the UCI website he is not even listed, I think they put Guercilena as general manager. That was a consecuence of the merger I believe, for some reason it was not possible otherwise. There was an article about it a while ago but I can't find it right now, maybe someone else remembers it. Bruyneel's official title is management consultant.
Anyways my point being even though he calls the shots he is in a fragile position and can be overruled or even overthrown by others at any time. He has been making unpopular decisions such as demoting Andersen and splitting up the Schleck brothers. Becca gave him the go-ahead, hoping that Bruyneel knew what he was doing and that it would all eventually pay off. Now the mood in the team if the worst it's ever been and there are no prospects of success any time soon. My question is how long can he keep making these unpopular decisions before Becca/Schlecks lose patience? If he was the boss he could continue his strategy and hope it would eventually show results. I could well imagine that Becca is going to pull rank soon and have Bruyneel come back to the classic approach when dealing with the Schleck brothers
/edit: Here is the article:
http://cyclismas.com/2012/03/radios...bontrager-livestrong-more-than-meets-the-eye/
http://www.uciworldtour.com/Modules...s/UCI/UCI2/layout.asp?MenuId=MTYzMDE&LangId=1