I think some of you are really exaggerating negatively.
He's still in 7th place. He lost two minutes, not 15.
Before the race I didn't expect him to be in contention for the win because of the lack of training, but then I got drawn in a bit in the hype, not only by you, but also because his team sounded pretty confident (and you must be very confident for GC if you leave Alvaro at home!!).
But so far this is no reason to pull him out of the race, unless he feels very fatigued. In terms of results a top10 would always be very strong with this preparation. There are quite a few good guys behind him.
The way I saw it he lost the time on the sterrato (only), I didn't watch him all of the time, but I saw him losing like 15 meters once on one of the gravel descents, that was clearly not because his legs are generally bad (at this point), but of course the repeated effort and maybe also the mental side drained him.
Anyway, we will see how he does in the next days. There is no need to be overdramatic at this point, and in no way does it say anything about his future abilities. He wasn't totally cooked for good, he seemed to have caught himself after a little while. Maybe he did not only struggle with the technical side but also with the repeated short punchy efforts, where on tarmac he is able to hold on but on gravel you have less slipstream effect/ more rolling resistance.
About the Almeida thing, I still don't understand and would honestly very much like to know what was going on. Could Almeida really be so bastardly? Did the team fight before this stage? Or was it more like Carolina suggested?