I can't believe that people still don't understand.
Historically the Green Jersey has heavily favoured sprinters (due to the points structure).
It is a points jersey, the amount of points awarded for different things will shape how the jersey is won. I am vehemently against the inclsuion of intermediate sprints.
The idea behind the Green Jersey should be to reward the most consistent finisher; whether this is a rider who dominates the bunch sprints, one who does well in bunch sprints whilst also placing well when faced with a different parcours (cobbles, medium mountains) or a GC rider who racks up a lot of high finishes and a few wins.
This way an all-rounder could beat a pure sprinter without tarnishing the jersey. We've already agreed that the polka dot can be won by a mediocre but combative climber. With the placement of the intermediate sprints Thor can use his mediocre climbing to secure cheap points.
Thor got 6 points for an all-day effort over 4 high mountains in stage 16 (it wasn't his fault that the tour organisers and teams conspired to act out a typical clockwise year stage into Pau). The same number of points can be awarded for negotiating a category 3 climb, desecending well and then being allowed to take the 6 bonus points by any breakaway companions.
Here's an excerpt form another post i made which describes how i think the Green Jersey should reward both consistency and excellence.
What to do about the intermediate points?
Make it into a prize (award points 5, 3, 2, 1 to reward consistent presence in breakaways, have finishes on both flat and uncategorised hills to suit different types of riders)
How to give all-rounders a chance in green jersey without discriminating against pure sprinters who dominate bunch sprints?
More stages which could end up in a bunch sprint but not necassarily (like the stage which Vino won, stage 2 but without the descent of death, cobbles but with more spare wheels at roadside).
Adopt standard 25 points downwards for top 15 in all non-flat stages, then 30 points downwards for top 15 in flat stages (30, 24, 20, 16, 14, 12, 10, 8, 7, 6, 5, 4, 3, 2, 1).
This would reward consistent sprinting as well as performance on more difficult stages.
Standings would currently be (if stage 2, in which only Hushovd made 1st group, was not neutralised)
After stage 3: Hushovd 75, Petacchi 30, Cavendish 0
After stage 4: Hushovd 82, Petacchi 60, Cavendish 4
After stage 5: Hushovd 96, Petacchi 68, Cavendish 34
From here on the finishing order was Cavendish ahead of Petacchi ahead of Hushovd (save for stage 16 to Pau)
After stage 18: Petacchi 158, Cavendish 155, Hushovd 133,
Contador 96 (so GC contender could win if he was to rack up high places in TT's and mountains, with emphasis on wins)
Since Hushovd's last good sprint: Cavendish 121, Petacchi 90, Hushovd 37